Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTPYEDLLRFVLETGTPKSDRTGTGTRSLFGQQMRYDLSAGFPLLTTKKVHFKSVAYELLWFLRGDSNIGWLHEHGVTIWDEWASDTGELGPIYGVQWRSWPAPSGEHIDQISAALDLLRTDPDSRRIIVSAWNVGEIERMALPPCHAFFQFYVADGRLSCQLYQRSADLFLGVPFNIASYALLTHMMAAQAGLSVGEFIWTGGDCHIYDNHVEQVRLQLSREPRPYPKLLLADRDSIFEYTYEDIVVKNYDPHPAIKAPVAV
4H0U Chain:C ((5-260))
-TPYEDLLRKIAEEGSHK------GTTSLFGQQIRFDLNEGFPLLTTKKVHFHSVVGELLWFLQGDSNVKWLQDNNIRIWNEWADEDGELGPVYGVQWRSWPTPDGRHIDQISGALETLRNNPDSRRNIVSAWNVSELENMALPPCHLLFQLYVADGKLSCQLYQRSADMFLGVPFNIASYALLTHMFAQQAGLEVGEFIWTGGDCHIYDNHKEQVAEQLSREARPYPTLELNKAASMFEYSFDDITVSGYDPHPLI------
General information:
TITO was launched using:
RESULT:
Template:
4H0U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -190663 for 1970 contacts (-96.8/contact) +
2D Compatibility (PS) -26954 + (NN) -13078 + (LL) 732
1D Compatibility (HY) -30800 + (ID) 9200
Total energy: -269963.0 ( -137.04 by residue)
QMean score : 0.584
(partial model without unconserved sides chains):
PDB file :
Tito_4H0U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4H0U-query.scw
PDB file :
Tito_Scwrl_4H0U.pdb
: