Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRIDIVTIFPACLDPLRQ-SLPGKAIESGLVDLNVHDLRRWTHDVHHSVDDAPYGGGPGMVMKAPVWGEAL---DEICSSETLLIVPTPAGVLFTQATAQRWTTESHLVFACGRYEGIDQRVVQDAARRMRVEEVSIGDYVLPGGESAAVVMVEAVLRLLAGVLGNPASHQDDSHSTGLDGLLEGPSYTRPASWRGLDVPEVLLSGDHARIAAWRREVSLQRTRERRPDLSHPD
4YQB Chain:A ((9-231))
MWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEID----EEWSIGDYVLTGGELPAMTLIDAVARFIPGVLG--------SFA---DGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPEL----
General information:
TITO was launched using:
RESULT:
Template:
4YQB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -130948 for 1507 contacts (-86.9/contact) +
2D Compatibility (PS) -22839 + (NN) -8743 + (LL) 364
1D Compatibility (HY) -20400 + (ID) 4500
Total energy: -187066.0 ( -124.13 by residue)
QMean score : 0.369
(partial model without unconserved sides chains):
PDB file :
Tito_4YQB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YQB-query.scw
PDB file :
Tito_Scwrl_4YQB.pdb
: