Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTARPLSELVERGWAAALEPVADQVAHMGQFLRAEIAAGRRYLPAGSNVLRAFTFPFDNVRVLIVGQDPYPTPGHAVGLSFSVAPDVRPWPRSLANIFDEYTADL-GYPLPSNGDLTPWAQRGVLLLNRVLTVRPSNPASHRGKGWEAVTECAIRALAARAAPLVAILWGRDASTLKPMLAAGNCVAIESPHPSPLSASRGFFGSRPFSRANELLVGMGAEPIDWRLP
1EMJ Chain:A ((55-221))
----------------------------------------------------------DVKVVILGQDPYHGPNQAHGLCFSVQRPVPP-PPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWK--
General information:
TITO was launched using:
RESULT:
Template:
1EMJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79875 for 1318 contacts (-60.6/contact) +
2D Compatibility (PS) -18258 + (NN) -12756 + (LL) 4864
1D Compatibility (HY) -14000 + (ID) 3850
Total energy: -123875.0 ( -93.99 by residue)
QMean score : 0.440
(partial model without unconserved sides chains):
PDB file :
Tito_1EMJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1EMJ-query.scw
PDB file :
Tito_Scwrl_1EMJ.pdb
: