Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTVVGAVLPELKLYGDPTFIVSTALATRDFQDVHHDRDKAVAQGSKDIFVNILTDTGLVQRYVTDWA-GPSALIKSIGLRLGVPWYAYDTVTFSGEVTAVND-GLITVKVVGRNT-LGDHVTATVELSMRDS
5CPG Chain:A ((11-139))
-LEVGQKAE-YTSSIAERDLQLFAAVSGDRNPVHLDAAYAATTQFKERIAHGMLSGALISAAIATVLPGPGTIYLGQTLRFTRPVKLGDDLKVELEVLEKLPKNRVRMATRVFNQAGKQVVDGEAEIMAPE-
General information:
TITO was launched using:
RESULT:
Template:
5CPG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68479 for 909 contacts (-75.3/contact) +
2D Compatibility (PS) -13690 + (NN) -1517 + (LL) 284
1D Compatibility (HY) 1200 + (ID) 1050
Total energy: -83252.0 ( -91.59 by residue)
QMean score : 0.303
(partial model without unconserved sides chains):
PDB file :
Tito_5CPG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5CPG-query.scw
PDB file :
Tito_Scwrl_5CPG.pdb
: