Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVREAGEVVAIVPAAGSGERLAVGVPKAFYQLDGQTLIERAVDGLLDSG----VVDTVVVAVPADRT--DEARQILGHRAMIVAGGSNRTDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVARVVEALRDGYAAVVPVL--PLSDTIKAVDANGVVLGTPERAGLRAVQTPQGFTTDLLLRSYQRGSLDLPAAEYTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIVRG
4NAK Chain:A ((5-224))
-------VSVILLAGG---------PKQYIPLLGQPI---ALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESIDVDLSFAIPGKERQDSVYSGLQEIDVNSE--LVCIHDSARPLVNTEDVEKV---LKDGSAVGAAVLGVPAKATIKEVNSDSLVVK-----TLWEMQTPQVIKPELLKKGFELVKSE--GLEVTDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERIL--
General information:
TITO was launched using:
RESULT:
Template:
4NAK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -140600 for 1492 contacts (-94.2/contact) +
2D Compatibility (PS) -21216 + (NN) -5960 + (LL) 2252
1D Compatibility (HY) -14000 + (ID) 3450
Total energy: -182974.0 ( -122.64 by residue)
QMean score : 0.383
(partial model without unconserved sides chains):
PDB file :
Tito_4NAK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NAK-query.scw
PDB file :
Tito_Scwrl_4NAK.pdb
: