Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MISSFRAQCAARVVREGGVIAYPTEAVWGLGCDPWNEDAVYRLLALKA-RPVEKGLIVVAANIHQLDFLLEDLPDVWLDRLAGTWPGPNTWLVPHQERLPEWVTGVHDSVA--VRVTDHPLVQELCHLTGPLISTSA-NPAGRPAARTRLRVEQYFHDELDAILGGALGGRRNPSLIRDLVTGQ---VIRPA
1AF7 Chain:? ((82-274))
NLTAFFREAHHFPILAEHARRRHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHSENFSNLVREFSLRGQTVYALS
General information:
TITO was launched using:
RESULT:
Template:
1AF7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73004 for 1433 contacts (-50.9/contact) +
2D Compatibility (PS) -19085 + (NN) -5407 + (LL) 0
1D Compatibility (HY) -1600 + (ID) 1400
Total energy: -100496.0 ( -70.13 by residue)
QMean score : 0.269
(partial model without unconserved sides chains):
PDB file :
Tito_1AF7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AF7-query.scw
PDB file :
Tito_Scwrl_1AF7.pdb
: