Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNDLTLHYLYDPLCGWCYGASPLLAAACEV-TGLDVRLHGGGMMTDANRQPVGAGLRHYVMPHDLRIAQLTGQPFGKDYFDGLLRDTSAVFDSAPPTAAVLAAEALDGLGAAMLARIQRAHYVEGRRIAERPVLLELGAELGLG-EGFAEAFDACSGEPLRAHFADSRRLMNRLGAAGFPTFALERDGRLQVLDTGRYLGQPDDWRAFLETQLRLAGGSGAVGGAAAPLCRIDGCA
3GYK Chain:A ((22-174))
-GDVTVVEFFDYNCPYCRRAMAEVQGLVDADPNVRLVYREWPILGE---------------------------------------------GSDFAARAALAARQQG-KYEAFHWALMGMSGK-----ANETGVLRIAREVGLDTEQLQRDME---APEVTAHIAQSMALAQKLGFNGTPSFVVEDA----LVP---GFVEQSQLQDAVDRARKAA--------------------
General information:
TITO was launched using:
RESULT:
Template:
3GYK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105665 for 1190 contacts (-88.8/contact) +
2D Compatibility (PS) -16133 + (NN) -3607 + (LL) 3324
1D Compatibility (HY) -6800 + (ID) 1450
Total energy: -130331.0 ( -109.52 by residue)
QMean score : 0.454
(partial model without unconserved sides chains):
PDB file :
Tito_3GYK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GYK-query.scw
PDB file :
Tito_Scwrl_3GYK.pdb
: