Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKQIEFFFDFGSPTTYLAWTQLPRIAAAH----GASIAWRPMLLGGVFKATGNHSP--I------EVPAKGRYTLHDLARYAKRYGVPLAFNPAFPINTLTLMRGAQGYLGGEGFQPYLKAVFEALWVRQQNL-GKPEVVAQVLAEAGFDPDEFLRLVGDE-QVKEGLKATTEEAVRRGVFGAPSFFVGDQ-LFFGQDRLDFVAEVLAG
3GL5 Chain:A ((2-209))
-HMRVEIWSDIACPWCYVGKARFEKALAAFPHRDGVEVVHRSFELDPGRAKDDVQPVLTMLTAKYGMSQEQAQAGEDNLGAQAAAEGLAYRTRDRDHGSTFDLHRLLHLAKERGRHEALLDAFYRGNFADERSVFNDDERLVELAVGAGLDAEEVRAVLADPAAYADEVRADEREAAQLGATGVPFFVLDRAYGVSGAQPAEVFTQALTQ
General information:
TITO was launched using:
RESULT:
Template:
3GL5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123204 for 1485 contacts (-83.0/contact) +
2D Compatibility (PS) -20767 + (NN) -5806 + (LL) 208
1D Compatibility (HY) -2400 + (ID) 1600
Total energy: -153569.0 ( -103.41 by residue)
QMean score : 0.449
(partial model without unconserved sides chains):
PDB file :
Tito_3GL5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GL5-query.scw
PDB file :
Tito_Scwrl_3GL5.pdb
: