Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGRPQAVPTVQVDNAEVIVTEWRFAPGAET--GRHRHGHDYVVVPLTDGTLLLETPEGDRHAPLVAGQAYFRKAGVEHNVINASAHEVVFVETEIK
1SQ4 Chain:A ((66-141))
---------------ETFSQYIVELAPNGGSDKPEQDPNAEA-VLFVVEGELSLTLQ-GQ-VHAMQPGGYAFIPPGADYKVRNTTGQHTRFHWIRKH
General information:
TITO was launched using:
RESULT:
Template:
1SQ4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27485 for 481 contacts (-57.1/contact) +
2D Compatibility (PS) -8450 + (NN) -3917 + (LL) 1080
1D Compatibility (HY) -400 + (ID) 650
Total energy: -39822.0 ( -82.79 by residue)
QMean score : 0.378
(partial model without unconserved sides chains):
PDB file :
Tito_1SQ4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SQ4-query.scw
PDB file :
Tito_Scwrl_1SQ4.pdb
: