Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNTTVIPPSLLDVDFPAGSVALVGAGPGDPGLLTLRAWALLQQAEVVVYDRLVARELIALLPESCQRIYVGKRCGHHSLPQEEINELLVRLARQQRRVVRLKGGDPFIFGRGAEELERLLEAGVDCQVVPGVTAASGCSTYAGIPLTHRDLAQSCTFVTGHLQNDGRLDLDWAGLARGKQTLVFYMGLGNLAEIAARLVEHGLASDTPAALVSQGTQAGQQVTRGALAELPALARRYQLKPPTLIVVGQVVALFAERAMAHPSYLGAGSPVSREAVACA
1PJQ Chain:A ((209-456))
----------SEPLDHRGEVVLVGAGPGDAGLLTLKGLQQIQQADIVVYDRLVSDDIMNLVRRDADRVFVGKR---HCVPQEEINQILLREAQKGKRVVRLKGGDPFIFGRGGEELETLCHAGIPFSVVPGITAASGCSAYSGIPLTHRDYAQSVRLVT------G--ELDWENLAAEKQTLVFYMGLNQAATIQEKLIAFGMQADMPVALVENGTSVKQRVVHGVLTQLGELA--QQVESPALIIVGRVVALRDKLNWFSNH----------------
General information:
TITO was launched using:
RESULT:
Template:
1PJQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -186697 for 1960 contacts (-95.3/contact) +
2D Compatibility (PS) -26100 + (NN) -11740 + (LL) 1688
1D Compatibility (HY) -26800 + (ID) 6650
Total energy: -256299.0 ( -130.76 by residue)
QMean score : 0.589
(partial model without unconserved sides chains):
PDB file :
Tito_1PJQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PJQ-query.scw
PDB file :
Tito_Scwrl_1PJQ.pdb
: