Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRILHSMLRVADLEAALEFYTRALDMRLLRRRDYPEGRFTLAFVGYQD---------ERAA------AALELTHNW-----DRDGYTQGD----GYGHLAIEVEDAAVTCARARALGYRVTREA--GLMQHGRSVIAFLEDPDGYKVELIQKGTQFD
4PV5 Chain:B ((33-177))
----QTMLRIKDPKKSLDFYTRVLGLTLLQKLDFPAMKFSLYFLAYEDKNDIPKDKSEKTAWTFSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKG----LAFIQDPDGYWIEILNPNKIAT
General information:
TITO was launched using:
RESULT:
Template:
4PV5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59309 for 777 contacts (-76.3/contact) +
2D Compatibility (PS) -13049 + (NN) -4782 + (LL) 780
1D Compatibility (HY) -13200 + (ID) 2550
Total energy: -92110.0 ( -118.55 by residue)
QMean score : 0.487
(partial model without unconserved sides chains):
PDB file :
Tito_4PV5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PV5-query.scw
PDB file :
Tito_Scwrl_4PV5.pdb
: