Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDNDDRIKLEASWKEALREEFDKPYMKQLGEFLRQEKAAGKVIFPPGPLIFNALNTTPLENVKVVIIGQDPYHGPGQAHGLCFSVQPGVPTPPSLQNIYKELNRDL-NIPIPNNGYLQRWAEQGVLLLNTSLTVEQAKAGSHANAGWQPFTDRVIEVVNERCERLVFLLWGSHAQSKQKLIDPQRHLILKSAHPSPL-------SAYRGFLGNGHFSRTNKFLEQNGKTPIDWSLPDL
2J8X Chain:C ((57-231))
------------------------------------------------------------SDIKVVILGQDPYHG-GQANGLAFSVAYGFPVPPSLRNIYAELHRSLPEFSPPDHGCLDAWASQGVLLLNTILTVQKGKPGSHADIGWAWFTDHVISLLSERLKACVFMLWGAKAGDKASLINSKKHLVLTSQHPSPLAQNSTRKSAQQKFLGNNHFVLANNFLREKGLGEIDWRL---
General information:
TITO was launched using:
RESULT:
Template:
2J8X.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82663 for 1289 contacts (-64.1/contact) +
2D Compatibility (PS) -18066 + (NN) -9745 + (LL) 3684
1D Compatibility (HY) -19600 + (ID) 4800
Total energy: -131190.0 ( -101.78 by residue)
QMean score : 0.555
(partial model without unconserved sides chains):
PDB file :
Tito_2J8X.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2J8X-query.scw
PDB file :
Tito_Scwrl_2J8X.pdb
: