Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTCAYRREIHHAHVAIRDWLAGDSRADALDALMARFAEDFSMVTPHG--VVLDKTALGELFRSKGGTR-PGLRIEIDGESLLASGVDGATLAYREIQSDAAG---RSERLSTVVLHRDDEGRLYWRHLQETFCG
3F7S Chain:A ((9-126))
----------EIRQLIERWMQAVRD-RDIPGIIAPYADDIVAFDAIQALQFKGKSAYTAHWEMCMGMCTGPMVFELAQLTVH-AAGDLALAHWLNRCGPGDDESQCGFMRATVGYRRQ-GGQ--WQVIHEHWSA
General information:
TITO was launched using:
RESULT:
Template:
3F7S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23941 for 740 contacts (-32.4/contact) +
2D Compatibility (PS) -11177 + (NN) 738 + (LL) 1584
1D Compatibility (HY) -4000 + (ID) 850
Total energy: -37646.0 ( -50.87 by residue)
QMean score : 0.244
(partial model without unconserved sides chains):
PDB file :
Tito_3F7S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3F7S-query.scw
PDB file :
Tito_Scwrl_3F7S.pdb
: