Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQMMQMYQQVGPAQFSAMIGQFAPYFASIA-PQFVELRPGYAEVTFPKRREVLNHIGTVHAIALCNAAELAAGTMTDASIPAGHRWIPRGMTVEYLAKAT-G-DVRAVADGSQIDWQAT-GNLVVPVVAYVD-D-KPVFRAEITMYVSQA
3F5O Chain:A ((2-139))
-TSMTQSLREVIKAMT-----KARNFERVLGKITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCT-ERGAPGVSVDMNITYMSPAKLGEDIVITAHVL----KQGKTLAFTSVDLTNKATGKLIAQGRHTKHLG--
General information:
TITO was launched using:
RESULT:
Template:
3F5O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71176 for 984 contacts (-72.3/contact) +
2D Compatibility (PS) -14275 + (NN) -4600 + (LL) 1436
1D Compatibility (HY) 1600 + (ID) 1150
Total energy: -88165.0 ( -89.60 by residue)
QMean score : 0.292
(partial model without unconserved sides chains):
PDB file :
Tito_3F5O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3F5O-query.scw
PDB file :
Tito_Scwrl_3F5O.pdb
: