Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---MTRAINDPGNEDPGSLLETDADALLGGAAA-QAPEERCRLAAQ------ACIRACERYLALCT-ESSREQRQHAGDCADLCRLAA-LLLERRSPWAPAAC-ELA-A--RYALACAERCDGDEPLERECAGACRRFVEA-CRPLLP-A
4MCJ Chain:A ((1-153))
GAQSEVVVLYPDTENKDLDEAVYQKIFLAGTIDMDWQKATCDWFRALPEGRYLLFNPRRDKGLSGEMSDFEHQVNWELEHLEKADLIIMNILASSKSPITLLEMGLFMRSGKLRVICEPGFYRYDNVRLTCARYGVPLYQNMDDFLKTMR
General information:
TITO was launched using:
RESULT:
Template:
4MCJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25179 for 865 contacts (-29.1/contact) +
2D Compatibility (PS) -13682 + (NN) -1530 + (LL) 0
1D Compatibility (HY) -1200 + (ID) 650
Total energy: -42241.0 ( -48.83 by residue)
QMean score : 0.239
(partial model without unconserved sides chains):
PDB file :
Tito_4MCJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MCJ-query.scw
PDB file :
Tito_Scwrl_4MCJ.pdb
: