Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQIRADFDSGNIQVIDASDPRRIRLAIRPDLASQHFQWFHFKVEGMAPATEHCFTLVNAGQSAYSHAWSGYQAVASYDGERWFRVPSQYDADGLHFQLEPEESEVRFAYFEPYSRERHARLVERALG-IE-GVERLAVGTSVQGRDIELLRVRRHPDSHLKLWVIAQQHPGEHMAEWFMEGLIERLQRP--DDTEMQRLLEKADLYLVPNMNPDGAFHGN-----LRT--------NAAGQDLNRAWLEP-------------------SAERSPEVWFVQQEMKRH--GVDLFLDIHGDEE-IPHVFAAGCEGNPGYTPRLERLEQRFREELMARGEFQIRHGYPRSAPG---QANLALACNFVGQTYDCLAFTIEMPFKDHDDNPEPGTGWSGARSKRLGQDVLSTLAVLVDELR |
| 3D4U Chain:A ((5-305)) | -----------------------------------------------------------------------------------------------------------YYEQYHSLNEIYSWIEVMTERYPDMVEKIHIGSSYEKYPLYVLKVSKK----NAMWIDCGIHAREWISPAFCLWFVGSVTYYYGK-----NLLKHMDFYIMPVVNVDGYDYTWKKDRMWRKNRSLHEKNACVGTDLNRNFASKHWCGEGASSSSCSEIYCGTYPESEPEVKAVADFLRRNIKHIKAYISMHSYSQKIVFPYSYSRSRSKDH-EELSLVAREAVFAMENIH---RNIRYTHGSGSESLYLAPGGSDDWIYDLGIKYSFTFELRDKG-----KYGFLLPESYIRPTCSEALVAVAKIASHV- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3D4U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -123025 for 2116 contacts (-58.1/contact) +
2D Compatibility (PS) -26705 + (NN) -7411 + (LL) 7656
1D Compatibility (HY) -11200 + (ID) 2200
Total energy: -162885.0 ( -76.98 by residue)
QMean score : 0.509
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