Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVYAIIGGTGLTQLEGLTLSESLPIETPYGAPSAPLQRGRYAGREVLFLARHGHPHRFPPHQVNYRANLWALKQAGAEAVIAVNAVGGIHAAMGTGHLCVPHQLIDYTSGREHTYFAGDIEHVTHIDFSHPYDEPLRQRLIEALRALGLAHSSHGVYACTQGPRLETVAEIARLERD--GNDIVGMTGMPEAALARELDLPYACLALVVNPAAGKSAGIITMAEIEQALHDGIGKVREVLARVLAG
2A8Y Chain:D ((12-250))
-----IIGGSGLYDPGIFSESKEIKVYTPYGQPSDFITIGKIGNKSVAFLPRHGRGHRIPPHKINYRANIWALKELGVRWVISVSAVGSLRMDYKLGDFVIPDQFIDMTKNREYSFFDGPV--VAHVSMADPFCNSLRKLAIETAKELNIKTHESGTYICIEGPRFSTRAE-SRTWREVYKADIIGMTLVPEVNLACEAQMCYATIAMVTDYDVFAEIP-VTAEEVTRVMAENTEKAKKLL------
General information:
TITO was launched using:
RESULT:
Template:
2A8Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -138772 for 1897 contacts (-73.2/contact) +
2D Compatibility (PS) -25488 + (NN) -16295 + (LL) 1748
1D Compatibility (HY) -18000 + (ID) 4400
Total energy: -201207.0 ( -106.07 by residue)
QMean score : 0.560
(partial model without unconserved sides chains):
PDB file :
Tito_2A8Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2A8Y-query.scw
PDB file :
Tito_Scwrl_2A8Y.pdb
: