Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKTRKDVCVPRHVAIIMDGNNRWAKKRLLPGVAGHKAGVDAVRAVIEVCAEAGVEVLTLFAFSSENWQRPADEVSALMELFLVALRREVRKLDENGIRLRIIGDRTRFHPELQAAMREAEAATAGNTRFLLQVAANYGGQWDIVQAAQRLAREVQGGHLAADDISAELLQGCLVTGDQPLPDLCIRTGGEHRISNFLLWQLAYAELYFSDLFWPDFKHAAMRAALADFSKRQRRFGKTSEQVEAEARPSC
1X09 Chain:A ((19-239))
-----------RHVAIIMAGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANR-------------------
General information:
TITO was launched using:
RESULT:
Template:
1X09.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -133826 for 1734 contacts (-77.2/contact) +
2D Compatibility (PS) -24890 + (NN) -19156 + (LL) 2084
1D Compatibility (HY) -22400 + (ID) 6300
Total energy: -204488.0 ( -117.93 by residue)
QMean score : 0.551
(partial model without unconserved sides chains):
PDB file :
Tito_1X09.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1X09-query.scw
PDB file :
Tito_Scwrl_1X09.pdb
: