Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAPLMHRFHSFVAASAVAIALCVGTAHAGLIAQGTRVVFPASEREVTLRVSNTS-GTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRIAYLK-APLPTDRESLFWLNILEVPPRDEDENNALQFSFRSRFKLFFRPSQLKSV-DSAAGKLQWKFLESGGAGKKTVVQVNNPTPYYVSFASVELIVDGRVMSVGKGMVAPFSTKEFDWQGNPKNMEAASVRYEVINDYGGRNTHDRALGK
1L4I Chain:A ((1-203))
----------------------------GVALGATRVIYPEGQKQVQLAVTNNDDKSSYLIQSWIENAEG-----KKDARFVITPPLFSMQGKKENTLRIIDATNGQMPEDRESLFWVNVKAIPAMD------LQFAIVSRIKLLYRPQGLVIPPEQAPGKLEFTRE----------LTLFNPTPYYLTVTDLKAGNK----SLENTMVPPQGKVTVNI--------GGDITYKTINDYGALTEQVRG---
General information:
TITO was launched using:
RESULT:
Template:
1L4I.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80458 for 1284 contacts (-62.7/contact) +
2D Compatibility (PS) -19744 + (NN) -7574 + (LL) 3488
1D Compatibility (HY) -14000 + (ID) 3050
Total energy: -121338.0 ( -94.50 by residue)
QMean score : 0.493
(partial model without unconserved sides chains):
PDB file :
Tito_1L4I.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1L4I-query.scw
PDB file :
Tito_Scwrl_1L4I.pdb
: