Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATAPRPLREQYLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIERGGLDIQGGEVIGLVVSSSCDYFAPVAFPQRIEMGLRVARLGNSSVQYELALFLEGQREACAAGRFVHVFVERRSSRPVAIPQELRDALAALQSSAQ
2CYE Chain:A ((2-131))
---------EGFPVRVRVDVRFRDLDPLGHVNNAVFLSYMELARIRYFQR-I--DWLE-EGHFVVARMEVDYLRPILLGDEVFVGVRTVGLGRSSLRMEHLVTA--NGESAAKGLGVLVWLE--GGRPAPLPEAIRERIRALEGR--
General information:
TITO was launched using:
RESULT:
Template:
2CYE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100610 for 932 contacts (-108.0/contact) +
2D Compatibility (PS) -13582 + (NN) -1943 + (LL) 972
1D Compatibility (HY) -7200 + (ID) 1800
Total energy: -124163.0 ( -133.22 by residue)
QMean score : 0.280
(partial model without unconserved sides chains):
PDB file :
Tito_2CYE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CYE-query.scw
PDB file :
Tito_Scwrl_2CYE.pdb
: