Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDQSNYSSLHGFILLGFSNHPKMEMILSGVVAIFYLITLVG---NTAIILASLLDSQLHTPMYFFLRNLSFLDL-----CFTTSIIPQML-VNLWGPDKTISYVGCIIQLYVYMWLGSVECLLLAVMSYDRFTAICKPLHYFVVMNPHLCLKMIIMIWSISLANSVVLCTLTLNLPTCGNNILDHFLCELPALVKIACV-------DTTTVEMSVFALGIIIVLTPLILILISYGYIAKAVLRTKSKASQRKAMNTCGSHLTVVSM--------------FYGTIIYMYLQPGNRASKDQGK-FLTL--FYTVITPSLNPLIYTLRNKDMKDALKKLMRFHHKSTKIKRNCKS |
| 1F88 Chain:A ((37-317)) | --------------------------FSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGP------TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG-VAFTWVMALA--------------CAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTV--KEAAA----SATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGS----DFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPSTTVSKTET |
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General information:
TITO was launched using:
| RESULT:
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Template: 1F88.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -220055 for 1824 contacts (-120.6/contact) +
2D Compatibility (PS) -24559 + (NN) 270 + (LL) 3760
1D Compatibility (HY) -22400 + (ID) 3200
Total energy: -266184.0 ( -145.93 by residue)
QMean score : 0.278
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