Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEAMKLLNQSQVSEFILLGLTSSQDVEFLLFALFSVIYVVTVLGNLLIIVTVFNTPNLNTPMYFLLGNLSFVD--MTLASFATPKVILNLLKKQKVISFAGCFTQIFLLHLLGGVEMVLLVSMAFDRYVAICKPLHYMTIMNKKVCVLLVVTSWLLGLLHSGFQIPFAVNLPFCGPNVVDSIFCDLPLVTKLAC-IDIYFVQVVIVANSGIISLSC--FIILLI----SYSLILITIKNHSPTGQS-----KARSTLTAHITVVILFFGPC------IFIYIWPFGNHSVDKFLAVFYTI------ITPILNPIIYTLRNKEMKISMKKLWRAFVNSREDT |
| 3CAP Chain:A ((55-317)) | --------------------------------------------NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTT--TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF-GENHAIMGVAFTWVMAL---------ACAAP---PLVGWSRY--IPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIF---THQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKN----- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3CAP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -200798 for 1651 contacts (-121.6/contact) +
2D Compatibility (PS) -23375 + (NN) 1075 + (LL) 5644
1D Compatibility (HY) -23200 + (ID) 3550
Total energy: -244204.0 ( -147.91 by residue)
QMean score : 0.155
|
|
|