Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKIANNTVVTEFILLGLTQSQDIQLLVFVLILIFYLIILPGNFLIIFTIRSDPGLTAPLYLFLGNLAFLDASYSFIVA-PRMLVDFLSEKKVISYRGCITQLFFLHFLGGGEGLLLVVMAFDRYIAICRPLHCSTVMNPRACYAMMLALWLGGFVHSIIQVVLILRLPFCGPNQLDNFFC----DVRQVIKLACTDMFVVELLMVFNSGLMTLLCFLGLLASYAVILCHVR--------------RAASEGKNKAMSTCTTRVIII---LLMFGP-AIFIYMCPFRAL----PADKMVSLFHTVIFPLMNPMIYTLRNQEVKTSMKRLLSRHVVCQVDFIIRN |
3AYM Chain:A ((64-336)) | -----------------------------------------------------SLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFG------WGAYTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMS---VSNHEKEMAAMAKRLNAKELRKAQAGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQFDDKET |
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General information:
TITO was launched using:
| RESULT:
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Template: 3AYM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -178615 for 1795 contacts (-99.5/contact) +
2D Compatibility (PS) -24745 + (NN) -4278 + (LL) 6512
1D Compatibility (HY) -22800 + (ID) 2850
Total energy: -226776.0 ( -126.34 by residue)
QMean score : 0.217
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