Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MENNTEVTEFILVGLTDDPELQIPLFIVFLFIYLITLVGNLGMIELILLDSCLHTPMYFFLSNLSLVDFGYSSAVTP---KVMVGFLTGDKFILYNACATQFFFFVAFITAES-FLLASMAYDRYAALCKPLHYTTTMTTN-------VCACL--AIG-SYICGFLNASIHTGNTFRLSFCRSNVVEHFFCDAPPLLTLSCSDNYISEMVIFFVVGFNDLFSILVILISYLFIFIT----IMKMRS-PEGRQKAFSTCASHLTA---VSIFYG-----------TGIFMYLRPNSSHFMGTDKMASVFYAIVI----PMLNPLVYSLRNKEVKSAFKKTVGKAKASIGFIF |
| 2YDV Chain:A ((12-303)) | ---------------------------VELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFAIAISTGFCAACHGCLFIAC------FVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKAHSQGCGEGQVACLFEDVVPM-------NYMVYFNFFACV----LVPLLLMLGVYLRIFLAARRQLKQMESQ--------STLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSH----APLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEPF |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YDV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -206014 for 1747 contacts (-117.9/contact) +
2D Compatibility (PS) -25219 + (NN) -9197 + (LL) 3516
1D Compatibility (HY) -27600 + (ID) 3800
Total energy: -268314.0 ( -153.59 by residue)
QMean score : 0.238
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