Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDWENCSSLTDFFLLGITNNPEMKVTLFAVFLAVYIINFSANLGMIVLIRMDYQLHTPMYFFLSHLSFCDLCYSTATG-PKMLVDLLAKNKSIPFYGCALQFLVFCIFADSECLLLSVMAFDRYKAIINPLLYTVNMSSRVCYLLLTGVYLVGIADALIHM------TLAFRLCFCGSNEINHFFCDIPPLLLLSRSDTQVNELVLFTVFGFIELSTISGVFISYCYIILSVLEIHSAE-------------GRFKALSTCTSHLSAVAIFQGTLLFMYFRPSSSYSL-----DQDKMTSLFYTLVVPML--------NPLIYSLRNKDVKEALKKLKNKILF |
| 3AYM Chain:A ((65-328)) | ------------------------------------------------------LQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFGWGAYTLEGVLCNCSFDYI-------------SRDSTTRSNILCMFILGF--FGPILIIFFCYFNIVMSVSN-HEKEMAAMAKRLNAKELRKAQAGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVTP--YAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLT |
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General information:
TITO was launched using:
| RESULT:
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Template: 3AYM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -151432 for 1683 contacts (-90.0/contact) +
2D Compatibility (PS) -23243 + (NN) -3382 + (LL) 6448
1D Compatibility (HY) -22400 + (ID) 3050
Total energy: -197059.0 ( -117.09 by residue)
QMean score : 0.197
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