Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MPTLNTSASPPTFFWANASGGSVLSADDAPMPVKFLALRLMVALAYGLVGAIGLLGNLAVLWVLSNCARRAPGPPSDTFVFNLALADLGLALTLPFWAAESALDFHWPFGGALCKMVLTATVLNVYASIFLITALSVARYWVVAMAAGPGTHLSLFWARIATLAVWAAAALVTVPTAVFGVEGEVCGVRLCLLRF--PSRYWLGAYQLQRVVLAFMVPLGVITTSYLLLLAFLQR------RQRRRQDSRVVARSVRILVASFFLCWFPNHVVTLWGVLVKFDLVPWNSTFYTIQTYVFPVTTCLAHSNSCLNPVLYCLLRREPRQALAGTFRDLRLRLWPQGGGWVQQVALKQVGRRWVASNPRESRPSTLLTNLDRGTPG |
5C1M Chain:A ((24-296)) | ---------------------------------------------YSIVCVVGLFGNFLVMYVIVRYTKMKTA--TNIYIFNLALADALATSTLPFQSVNYLMG-TWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLPVMFMATTKYRQGSIDCTLTFSHPTWYWENLLKICVFIFAFIMPVLIITVCYGLMILRLKSVRMLSGSKEKDRNLRRITRMVLVVVAVFIVCWTPIHIYVIIKALIT---IPET----TFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCF------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 5C1M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -225260 for 1975 contacts (-114.1/contact) +
2D Compatibility (PS) -26991 + (NN) -6372 + (LL) 5644
1D Compatibility (HY) -27600 + (ID) 4050
Total energy: -284629.0 ( -144.12 by residue)
QMean score : 0.301
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