Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLRVVEGIFIFVVVSESVFGVLGNGFIGLVNCIDCAKNKLSTIGFILTGLAISRIFLIWIIITDGFIQIFSPNIYASGNLIEYISYFWVIGNQSSMWFATSLSIFYFLKIANFSNYIFLWLKSRTNMVLPFMIVFLLISSLLNFAYIA-KILNDYKTKNDTVWDLNMYK-SEYFIKQILLNLGVIFFFTLSLITCIFLIISLWRHNRQMQSNVTG------------------------------------------------------------------------------------------------------------------------------------------------------LRDSNTEAHVKAMKVLISFIILFILYFIGMAIEISCFTV-------------RENKLLLMFGMTTTAIYPWGHSFILILGNSKLKQASLRVLQQLKCCEKRKNLRVT |
3ODU Chain:A ((47-498)) | ----NKIFLPTIYSIIFLTGIVGNGLVILVMGYQK--KLRSMTDKYRLHLSVADLLFVITL-PFWAVDAV-ANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVH---ATNSQ-RPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSEADDRYICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSGRPLEVLFQ---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3ODU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -227848 for 2048 contacts (-111.3/contact) +
2D Compatibility (PS) -28214 + (NN) 4062 + (LL) 1408
1D Compatibility (HY) -15600 + (ID) 2000
Total energy: -268192.0 ( -130.95 by residue)
QMean score : 0.186
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