Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LEMSC---IQNLLPCKPYLPGTEP-PPPVCCLPLKDMVA-----HQAQCLCSALANPDLLKDFNVTMDGALKLAKTCGASVDMSV-------CKNGNH
1BWO Chain:A ((1-90))
--IDCGHVDSLVRPCLSYVQGGP-GPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLN-EDNARSIPPKCG--VNLPYTISLNIDCSRV--
General information:
TITO was launched using:
RESULT:
Template:
1BWO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35194 for 454 contacts (-77.5/contact) +
2D Compatibility (PS) -7872 + (NN) -5375 + (LL) 272
1D Compatibility (HY) -2000 + (ID) 900
Total energy: -51069.0 ( -112.49 by residue)
QMean score : 0.327
(partial model without unconserved sides chains):
PDB file :
Tito_1BWO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BWO-query.scw
PDB file :
Tito_Scwrl_1BWO.pdb
: