Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MCNQQTRVLISTILCRIAIWYDHMLFIDLVNIISREFCSAKDVYYNILQLFGIAGLGAMVRPLGASVFGHIGDRYGRKMALTIAILLISIPSSLVAFIP-GYSRVGITSTILLF-AIHVTQ--------GIALGAEQGGSSVYLIEHLSNKKKLGMFFGIISFGRSIGVLLFVMIVIICKKITD---FNAWGWRMPFTFSAIWGLMSAYSIYTLGETPAYEKNREQRN---------LPNLPIIELVKRYKRAL---ILAVLISVPVNVAVGFTIFLRTIAKEIV---QVEMYVTTYVNEIVLIITSILIPISSIALGMLA----DRVGKERIAILFIIITIILCCPMLSI--AYYYKSYLIIMLSVMALSIIERGIN--PI-GIVASELFPPNVRFSGVSLSRNISFALHGGFTPMICTWLTITFPQINFVAGLYIIFCLLISLIAILQIKSQDKNFDW |
| 4JA4 Chain:A ((70-411)) | --------------------------------------------------------------IGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAE-LAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLM----QEQAEGILRKIMGNTLATQAVQEIKHSLDHG--MFGVGVIV-IGVMLSIFQQFVGINVVLYYAPEV-----------LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQ---IIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4JA4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -180565 for 1832 contacts (-98.6/contact) +
2D Compatibility (PS) -28536 + (NN) 806 + (LL) 8268
1D Compatibility (HY) -26800 + (ID) 3500
Total energy: -230327.0 ( -125.72 by residue)
QMean score : 0.219
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