Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKEQKIQAFEWFRALRDRVVESFLLIEGQSPTDPKIEKRKWDRPGGGGGESTI-IYGDVFEKVGVNISKVYGK-FADSVVNEIPGASESNGEFWASGISLVSHMQSPLVPAAHMNTRLIYTSKQ------WFGGGMDFTPTYKNEEDYKYIHESIKTTCDKFDAEYYLKFKEQCDNYFFLQHRKEPRGIGGIFYDNLNSGRWENDFEFTKAVGETFLKIYLHIIRQHMRKPWTKEQRETQLIKRGRYVEFNLLYDRGTKFGLMTDGNPDAIMMSMPPLVKWM |
| 1VJU Chain:A ((23-283)) | --------------LQDDICEALEAEDGQA----TFVEDKWTREGGGGGRTRVMVDGAVIEKGGVNFSHVYGKG-----------IAGCN--FEAMGVSLVIHPKNPHVPTSHANVRLFVAEREGKEPVWWFGGGFDLTPYYAVEEDCRDFHQVAQDLCKPFGADVYARFKGWCDEYFFIPYRNEARGIGGLFFDDLNEWPFEKCFEFVQAVGKGYMDAYIPIVNRRKNTPYTEQQVEFQEFRRGRYAEFNLVIDRGTKFGLQSGGRTESILISLPPRARWG |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VJU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 25900 for 1894 contacts (13.7/contact) +
2D Compatibility (PS) -24838 + (NN) -4125 + (LL) 1896
1D Compatibility (HY) 11600 + (ID) 1200
Total energy: 9233.0 ( 4.87 by residue)
QMean score : 0.134
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