Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRQIKVVLIGGGTGLSVMARGLREFPI----------DITAIVTVADNGGSTG--KIRDEMDIPAPGDIRNVIAALSDS-ESVLSQL----FQYRFEENQISGHSLGN---LLIAGMTNITNDFGHAIKALSKILN-IKGRVIPSTNTSVQLNAVMEDGEIVFGETNIPKKHKKIDRVFLEPNDVQPMEEAIDALREADLIVLGPGSLYTSVISNLCVNGISDALIHSDAPKLYVSNVMTQPGETDGYSVKDHIDAIHRQAGQPFIDYVICSTQTFNAQVLKKYEEKHSKPVEVNKAELEKESINVKTSSNLVEISENHLVRHNTKVLSTMIYDIALELISTIPFVPSDKRK |
| 3GDE Chain:A ((170-333)) | --------VGEGIMRDAIARAFRADPETVERAYMITNDLGRVAVVAKKEGEEGLRKMKIEIHIP----VRMMLAQVAESLESAVREMRTAAVEWKFDGSRVQVHWDGSRVTIYSRRLENVTN-------ALPDIVEEIKKSVKP---------GVILDGEVIAVKEGKPMPFQHVLRRFRR--DVAKMVEKI---------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GDE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -46262 for 823 contacts (-56.2/contact) +
2D Compatibility (PS) -14199 + (NN) 305 + (LL) 12184
1D Compatibility (HY) -9600 + (ID) 2250
Total energy: -59822.0 ( -72.69 by residue)
QMean score : 0.119
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