Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVDVAFVCLGNICRSPMAEAIMRQRLKDRNIHD-IKVHSRGTGSWNLGEPPHEGTQKILNKHNIPFDGMISELF-EATDDFDYIVAMDQSNVDNIKSIN---PNLKGQLFKLLEFSNMEESDVPDPYYTN--NFEGVYDMVLSSCDNLIDYIVKDANLKEG
5PNT Chain:A ((8-154))
---VLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRGQSCMKRHGIPMSHVARQITKEDFATFDYILCMDESNLRDLNRKSNQVKTCKAKIELLGSYDPQKQLIIEDPYYGNDSDFETVYQQCVRCCRAFLE-----------
General information:
TITO was launched using:
RESULT:
Template:
5PNT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85765 for 1169 contacts (-73.4/contact) +
2D Compatibility (PS) -14906 + (NN) -6586 + (LL) 1036
1D Compatibility (HY) -14800 + (ID) 2500
Total energy: -123521.0 ( -105.66 by residue)
QMean score : 0.505
(partial model without unconserved sides chains):
PDB file :
Tito_5PNT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5PNT-query.scw
PDB file :
Tito_Scwrl_5PNT.pdb
: