Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLTLMKFFVGGFAVLLSYIVSVTLPWKEFGGIFATFPAVFLVSMFITGMQYGDKVAVHVSRGAVFGMTGVLVCILVTWMMLHMTHMWLISIIVGFLSWFISAVCIFEAVEFIAQKRLEKHSWKAGKSNSK
2QCT Chain:A ((235-266))
--------------------------------------------------QEDDSVPICIHCSAGCGRTGVICAIDYTWMLL-------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2QCT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13730 for 132 contacts (-104.0/contact) +
2D Compatibility (PS) -3333 + (NN) -745 + (LL) 9484
1D Compatibility (HY) -3200 + (ID) 650
Total energy: -12174.0 ( -92.23 by residue)
QMean score : -0.043
(partial model without unconserved sides chains):
PDB file :
Tito_2QCT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QCT-query.scw
PDB file :
Tito_Scwrl_2QCT.pdb
: