Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSLEWGLLIFLILVFLVGIGYYVFMVFSSKD
2LOT Chain:A ((29-50))
-----ALIPAIYMLVFLLGTTGNGLVLWTVFR
General information:
TITO was launched using:
RESULT:
Template:
2LOT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15444 for 85 contacts (-181.7/contact) +
2D Compatibility (PS) -2117 + (NN) 814 + (LL) 384
1D Compatibility (HY) -2000 + (ID) 250
Total energy: -18613.0 ( -218.98 by residue)
QMean score : 0.200
(partial model without unconserved sides chains):
PDB file :
Tito_2LOT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LOT-query.scw
PDB file :
Tito_Scwrl_2LOT.pdb
: