Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATKKTKKNKEKKQALENPLKGLYLSLRLKAFITDIFMIYTPMLYIMTYAILGSAKD-FRENQSAIFLCLLFYALTHSFFIAFKSQSPGMRYARFKLVKNNGEKVDFFLALWRFVL------WVLSMGLLVGFVAPFIFKFFLHDKFSSTHIEIIKEEI
3RCE Chain:A ((155-257))
---------------------------------TDMLVLVLPMLILLTFIRLTINKDIFTLLLSPIFIMIYLWWYPSSYSLNFAMIG---LFGLYTLVFHRKEKI-FYLAIALMIIALSMLAWQYKLALIVLLFAIFAFKEEKINFYMIWALIFISISI
General information:
TITO was launched using:
RESULT:
Template:
3RCE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57137 for 631 contacts (-90.5/contact) +
2D Compatibility (PS) -10034 + (NN) -5372 + (LL) 2552
1D Compatibility (HY) -16800 + (ID) 1450
Total energy: -88241.0 ( -139.84 by residue)
QMean score : 0.132
(partial model without unconserved sides chains):
PDB file :
Tito_3RCE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RCE-query.scw
PDB file :
Tito_Scwrl_3RCE.pdb
: