Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFIDTHCHLDHKDYENDLDEVLKESLEKGVTQCVIPGADMKDLNRAVGISEKFEGVFFAIGAHPYDVESFDEGLFEKFV---SHQKCVAIGECGLDYYRLPELSERENYKS--KQKEIFTKQIEFSIQHNKPLIIHIREASFDSLNLLKSYPKAF--GVLHCFNA--DSMLLELSDRFYYGI-GGVSTFKNAKRLVEILPKIPKNRLLLETDSPY-----LTPHPFRGTRNSPTYIPLIAQKIAEIIHIETEELASLSTHNAQTLFNFP
1XWY Chain:A ((5-262))
MF-DIGVNLTSSQFAKDRDDVVACAFDAGVNGLLITGTNLRESQQAQKLARQYSSCWSTAGVHPHDSSQWQAATEEAIIELAAQPEVVAIGECGLDFNR--------NFSTPEEQERAFVAQLRIAADLNMPVFMHCRDAHERFMTLLEPWLDKLPGAVLHCFTGTREEMQACVAHGIYIGITGWVCDERRGLELRELLPLIPAEKLLIETDAPYLLPRDLTPKP-SSRRNEPAHLPHILQRIAHWRGEDAAWLAATTDANVKTLFGIA
General information:
TITO was launched using:
RESULT:
Template:
1XWY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -153078 for 2043 contacts (-74.9/contact) +
2D Compatibility (PS) -26323 + (NN) -16580 + (LL) 932
1D Compatibility (HY) -18000 + (ID) 4000
Total energy: -217049.0 ( -106.24 by residue)
QMean score : 0.558
(partial model without unconserved sides chains):
PDB file :
Tito_1XWY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XWY-query.scw
PDB file :
Tito_Scwrl_1XWY.pdb
: