Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGRKWANIKEKKASKDKTNSRIYAKFGIEIYVAAKSGDPDPHSNQKLRFVIERAKTYNVPKHIIDRAIEKAKGTGDETYSELRYEGFGPNGSMIIVDALTNNVNRTASDVRAAYSKN-GGNMGVSGSVAYMFDNTAIFGVEGKDADEL---LELLMEADID--VRDILDEDGQAIIYAEPEDFHKVQEGLKAAGIEEFTVAEIEMIPQNDIQLSGEDLEKFERLIDALEDLEDVQKVYHNVELED
1MW7 Chain:A ((21-240))
--------------------KVFPKLAKAITLAAKDGGSEPDTNAKLRTAILNAKAQNMPKDNIDAAIKRA-SSKEGNLSEITYEGKANFGVLIIMECMTDNPTRTIANLKSYFNKTQGASIVPNGSLEFMFNRKSVFECLKNEVENLKLSLEDLEFALIDYGLEELEEVEDKIIIRGDYNSFKLLNEGFESLKL-PILKASLQRIATTPIELNDEQMELTEKLLDRIEDDDDVVALYTNIE---
General information:
TITO was launched using:
RESULT:
Template:
1MW7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60672 for 1583 contacts (-38.3/contact) +
2D Compatibility (PS) -23594 + (NN) -13402 + (LL) 1404
1D Compatibility (HY) -14400 + (ID) 3450
Total energy: -114114.0 ( -72.09 by residue)
QMean score : 0.508
(partial model without unconserved sides chains):
PDB file :
Tito_1MW7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MW7-query.scw
PDB file :
Tito_Scwrl_1MW7.pdb
: