Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADISKELIEQLVKQVVLEKMGQSSKHVDPSGILSVKLPVVKVSEEDRLDTGNPSDVVYTKDLVTLEESKRLGFGLMEMKDTTFDWFLDYDEVDYVIEGRLDVVI-DGRTVSAGPGEIIFIPKGSQIKFSVTGEARFIYVTYPADWQS
1LKN Chain:A ((21-86))
-------------------------------------------------------------------------WPIWEKEVSEFDWYYDTNETCYILEGKVEVTTEDGKKYVIEKGDLVTFPKGLRCRWKVLEPVRKHY---------
General information:
TITO was launched using:
RESULT:
Template:
1LKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39376 for 401 contacts (-98.2/contact) +
2D Compatibility (PS) -7228 + (NN) -2406 + (LL) 5604
1D Compatibility (HY) -4800 + (ID) 950
Total energy: -49156.0 ( -122.58 by residue)
QMean score : 0.403
(partial model without unconserved sides chains):
PDB file :
Tito_1LKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LKN-query.scw
PDB file :
Tito_Scwrl_1LKN.pdb
: