Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKKYPLIAIVLLALVGIGLLMGGFKSFFILIVSVLIGTLIFTLLLRLFTNRKTDSNYQKAVKQSKNMHNPKKKTKKKRKSSFKVIDGGKK
3U5M Chain:A ((112-155))
-------------------------------------------------------NYYKIIKKPMDLSTVKKKLQKKHSQHYQIPD----
General information:
TITO was launched using:
RESULT:
Template:
3U5M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 12519 for 112 contacts (111.8/contact) +
2D Compatibility (PS) -2961 + (NN) 1446 + (LL) 5116
1D Compatibility (HY) -1600 + (ID) 500
Total energy: 14020.0 ( 125.18 by residue)
QMean score : 0.324
(partial model without unconserved sides chains):
PDB file :
Tito_3U5M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3U5M-query.scw
PDB file :
Tito_Scwrl_3U5M.pdb
: