Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQKVVIIGGGIVGASAAYLLSKENVQVTLIDSDE-AGQATRAAAGIICPWLSKRRNKYWYELAKNSAAFYKELAETLEGDTGRDSGYKQVGVLALRQTEEKLAELFNLARERRLDAEVMGEVAKLSEAETKQRFPLVKSG-FGSVYVSGAARVNGGLFCETLLYAAKENGVKI--KAGRAHFSSDGEVVI------DGEKEHYDKLILATGAWLKDLLQDAGFQTDVLAQKGQLLELNFSEFQTDDWPV--ILPPSAKSIVPFDNGKIIVGATHEKAAGFNTEPTAEGKAEILTEVSQFMEGDLASKVAHVSVGTRPYTPDFTPIIGQLPGFESVFLANGLGASGLTTGPYVGRILADLALGNASDFVLENYEPSKYISR |
| 1NG4 Chain:A ((42-368)) | -----------------YYLAKENKNTALFESGTMGGRTTSAAAGMLGAHAECEERDAFFDFAMHSQRLYKGLGEELYALSGVDIRQHNGGMFKLAFSEEDVLQL------RQMDD--LDSVSWYSKEEVLEKEPYASGDIFGASFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSGDVWANH---VVVASGVWSGMFFKQLGLNNAFLPVKGECLSV-----WNDDIPLTKTLYHDHCYIVPRKSGRLVVGAT-MKPGDWSETPDLGGLESVMKKAKTMLPPIQNMKVDRFWAGLRPGTKDGKPYIGRHPEDSRILFAAGHFRNGILLAPATGALISDLIM------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1NG4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -116595 for 2578 contacts (-45.2/contact) +
2D Compatibility (PS) -33953 + (NN) -10238 + (LL) 3324
1D Compatibility (HY) -18800 + (ID) 4450
Total energy: -180712.0 ( -70.10 by residue)
QMean score : 0.452
|
|
|