Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFMEKKHFDLNDVVEMKKPHPCGTNRFKIIRMGMDIRIKCEGCGHSVMIPRREFERKVKKILVKAEQE
1TWF Chain:L ((34-56))
---------------------CS-SKLSLSR---TDAVRCKDCGHRIL--------------------
General information:
TITO was launched using:
RESULT:
Template:
1TWF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8511 for 91 contacts (-93.5/contact) +
2D Compatibility (PS) -2503 + (NN) -1277 + (LL) 3980
1D Compatibility (HY) -2400 + (ID) 300
Total energy: -11011.0 ( -121.00 by residue)
QMean score : 0.183
(partial model without unconserved sides chains):
PDB file :
Tito_1TWF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TWF-query.scw
PDB file :
Tito_Scwrl_1TWF.pdb
: