Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIDVRLINGIALAFEGDAVYSLYIRRHLIMQGFTKPNQLHRKATQYVSANAQALLINAMLEEN-----ILTDE-EQLIYKRGRNANS----H---TKAKNADIITYRMSTGFEALMGYLDMTGQIKRLETLIQWCIETIEK
4GHL Chain:A ((7-104))
--------------------------------FSKPN---------LSAKDLALLLFTHLPGNNTPFHILAQVLSKIAYKSGKSGAFLDAFHQILSEGENAQAALTRLSRTFDAFMGVVPPVIRVKNFQTVPRPCQKSLRA
General information:
TITO was launched using:
RESULT:
Template:
4GHL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15403 for 463 contacts (-33.3/contact) +
2D Compatibility (PS) -8760 + (NN) -981 + (LL) 3976
1D Compatibility (HY) -4800 + (ID) 1400
Total energy: -27368.0 ( -59.11 by residue)
QMean score : 0.240
(partial model without unconserved sides chains):
PDB file :
Tito_4GHL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GHL-query.scw
PDB file :
Tito_Scwrl_4GHL.pdb
: