Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSILDDYEKELLVISHQIIAYLIKSGVNPSQAQDVTQDVFLQILE--SDFSLPLDKIKAWMYRTTIRRYIDLYR--RNKRYNEILQKEFFIENNLYYTESEKFFELHEAILHLKKDYQTLIDLYYFNDFSIKEISEITGQSQSTIKIRLMRARREVKKYLEKDNFKI
4NQW Chain:A ((68-202))
-------------------------------SEETTQEIYLEVWRNASEFDSAKGSALAWLLTMAHRRAVDRVRCE---------------------AGDERR-RVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSLRNCLD------
General information:
TITO was launched using:
RESULT:
Template:
4NQW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32709 for 604 contacts (-54.2/contact) +
2D Compatibility (PS) -11443 + (NN) -4128 + (LL) 4788
1D Compatibility (HY) -5200 + (ID) 1350
Total energy: -50042.0 ( -82.85 by residue)
QMean score : 0.470
(partial model without unconserved sides chains):
PDB file :
Tito_4NQW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NQW-query.scw
PDB file :
Tito_Scwrl_4NQW.pdb
: