Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLVAEDQSMLRDAMCQLLLMEESVSTIDQAGNGGEAIAILSNKAIDVAILDVEMPILSGLDVLEWVRKYQNVKVIIVTTFKRSGYFQRAIRSNVDAYVLKDRSVADLMKTIQKVLSGGKEYSPELMENVIS--NPLSEQEIKILSLIAQGKTSKEIACTLFLSNGTVRNYTSNIFDKLGVNNRLEALKIAREKDWL
4LDZ Chain:A ((8-198))
--IFIAEDQQMLLGALGSLLNLEDDMEVVGKGTTGQDAVDFVKKRQPDVCIMDIEMPGKTGLEAAEEL-KDTGCKIIILTTFARPGYFQRAIKAGVKGYLLKDSPSEELANAIRSVMNGKRIYAPELMEDLYSEANPLTDREKEVLELVADGKNTKEIAQELSIKSGTVRNYISMILEKLEVKNRIEAITRSKE----
General information:
TITO was launched using:
RESULT:
Template:
4LDZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117569 for 1436 contacts (-81.9/contact) +
2D Compatibility (PS) -20136 + (NN) -4745 + (LL) 692
1D Compatibility (HY) -17600 + (ID) 4150
Total energy: -163508.0 ( -113.86 by residue)
QMean score : 0.408
(partial model without unconserved sides chains):
PDB file :
Tito_4LDZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LDZ-query.scw
PDB file :
Tito_Scwrl_4LDZ.pdb
: