Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFENIIYGIDGNVATIMLNRPDISNGFNIPMCQEIIDAIRLVSENKDVMFLVIEAQGPIFSIGGDLKVMKAAVESDDISSLTKIAELVNQISYDLLQLEKPVVMCVDGAVAGAAANIALAADFVIASKKSKFIQAFVGVGLAPDAGGLLLLSKSIGITRAVQLALTGESLSAEKAEALGIVYKLCESDKIGKIKDQLLKRLSRHSINSYQAIKSLAWEAAFKDWEQYKKLELQLQESLAFKQDFKEGVRAHADRRRPNFLGK
4LK5 Chain:A ((44-280))
------------GVFSVTINRPDSLNSLTVPVITGIADAMEYAATDPEVKVVRIGGAGRGFSSG-------AGIS-----PPDEIILEINRLVRAIAALPHPVVAVVQGPAAGVGVSIALACDVVLASENAFFMLAFTKIGLMPDGGASALVAAAVGRIRAMQMALLPERLPAAEALAWGLVTAVYPADEFEAEVDKVIARLLSGPAVAFAKTKLAINAATLTELDPALQREFDGQSVLLKSPDFVEGATA------------
General information:
TITO was launched using:
RESULT:
Template:
4LK5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -176506 for 1933 contacts (-91.3/contact) +
2D Compatibility (PS) -25019 + (NN) -8587 + (LL) 1556
1D Compatibility (HY) -11200 + (ID) 3550
Total energy: -223306.0 ( -115.52 by residue)
QMean score : 0.560
(partial model without unconserved sides chains):
PDB file :
Tito_4LK5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LK5-query.scw
PDB file :
Tito_Scwrl_4LK5.pdb
: