Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDIQEIKDLMTQFDESSLREFSFKTSDGELSFSKNEGKAPLVPTMSPMSHQPEATPTIATPVSNEAGEQTKQATEVVSEIPESTVTVAEGDVVESPLVGVAYLASGPDKPNFVSVGDSVKKGQTLMIIEAMKVMNEVPAPHDGVVTEILVANEEVIEFGKGLVRIK
1BDO Chain:A ((4-80))
-----------------------------------------------------------------------------------------GHIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE
General information:
TITO was launched using:
RESULT:
Template:
1BDO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48573 for 511 contacts (-95.1/contact) +
2D Compatibility (PS) -8156 + (NN) 632 + (LL) 5460
1D Compatibility (HY) -8800 + (ID) 1700
Total energy: -61137.0 ( -119.64 by residue)
QMean score : 0.596
(partial model without unconserved sides chains):
PDB file :
Tito_1BDO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BDO-query.scw
PDB file :
Tito_Scwrl_1BDO.pdb
: