Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKQAETLTSLEQVLKQIKYSLDSYYSFCVKKGFVLKVIPVRENI--EEVSYLLNMIESQKDTEISTYYVDKLSKQLKEFVKKLNSWEVKPLFTSEQLSKLTTYSTFLENKE
2PV4 Chain:A ((59-126))
---------------QLPDSASSLFERCVFHGFYLANAWIQLSIVARDISELQDTDEAIAEQEYSGLYVRVAEAALKESVKKLKKARTDRSMYNSMREVMGI---------
General information:
TITO was launched using:
RESULT:
Template:
2PV4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9584 for 345 contacts (-27.8/contact) +
2D Compatibility (PS) -6406 + (NN) 140 + (LL) 2300
1D Compatibility (HY) -3200 + (ID) 1150
Total energy: -17900.0 ( -51.88 by residue)
QMean score : 0.251
(partial model without unconserved sides chains):
PDB file :
Tito_2PV4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PV4-query.scw
PDB file :
Tito_Scwrl_2PV4.pdb
: