Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKKLGCLGVLMSIPFFIVVIVTIIFSSSQGDCQVTPDLSTQFVTSSDSASQTDWTKKGSIANVTAGKVFHAWV----SKGLSGASAAGIVGWVNSEG-GFGKYSWNYRYVTTAELKNEGYTFYNPAKLGYQIMKSVGTVGK
2FCK Chain:A ((11-105))
----------------------------------VTQRLQLRLITADEA--------EELVQCIRQSQTLHQWVDWFSQQEAEQFIQATRLNWVKAEAYGFGVFERQTQTLVGMVAINEFYHTFNMASLGYWIGDRYQRQGY
General information:
TITO was launched using:
RESULT:
Template:
2FCK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 6918 for 511 contacts (13.5/contact) +
2D Compatibility (PS) -8344 + (NN) 2639 + (LL) 3364
1D Compatibility (HY) -4800 + (ID) 1150
Total energy: -1373.0 ( -2.69 by residue)
QMean score : -0.127
(partial model without unconserved sides chains):
PDB file :
Tito_2FCK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FCK-query.scw
PDB file :
Tito_Scwrl_2FCK.pdb
: