Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSKKTDTPDYKPSIYSLTRDELIAWAIEHGEKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLNENFVVNPLKQRIVQESADGTVKYLFELPDGMLIETVLMRQYYGLSVCVTTQVGCNIGCTFCASGLIKKQRDLNNG------EITAQIMLVQKYFDERGQGERVSHIVVMGIGEPFDNYTNVLKFLRTVNDDNGLAIGARHITVSTSGLAHKIREFANEGVQVN--LAVSLHAPNNELRSSIMRINRSFPLEKLFAAIEYYIETTNRRVTFEYIMLNGVNDTPENAQELADLTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYDVLKKNGVNCVVRQEHGTDIDAACGQLRSNTMKRDRQKAKVGR |
3C8F Chain:A ((23-207)) | -----------------------------------------------------------------------------------------------------------------ITFFQGCLMRCLYCHN---RDTWDTHGGKEVTVEDLMKEVVTYRHFMNASGGG------VTASGGEAILQAEFVRDWFRACKKE------GIHTCLDTNGFVRRYDPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLE--FAK---YLANKNVKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGILEQYGHKVMF-------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3C8F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -69761 for 1306 contacts (-53.4/contact) +
2D Compatibility (PS) -19167 + (NN) -9623 + (LL) 11684
1D Compatibility (HY) -16000 + (ID) 1950
Total energy: -104817.0 ( -80.26 by residue)
QMean score : 0.411
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