Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKIKIVTDSSITIEPELIKELDITVVPLSVMI-DGTLYSDNDLKAQGEFLNLMRGSKE---LPKTSQPPVGVFAEIYEKLMNEGAEHIIAIHLTHTLSGTIEASRQGANIAGADVTVIDSTFTDQCQKFQVVEAAKLAKEGADLDTILARVEEVRQKSELF---IGVSTLENLVKGGRIGRVTGLLSSLLNIKVIMELTNHELVPIVKGRGLKT-----FSKWLDNFVESAQTRKIAEIGISYCGKADMANNFKEKLAVLGAPISVLETGSIIQTHTGEDAFAVMVRYE |
| 1VPV Chain:A ((14-285)) | --KVKILVDSTADVPFSWMEKYDIDSIPLYVVWEDGR--SEPDEREPEEIMNFYKRIREAGSVPKTSQPSVEDFKKRYLKYKEEDYDVVLVLTLSSKLSGTYNSAVLASKEVDIPVYVVDTLLASGAIPLPARVAREMLENGATIEEVLKKLDE-RMKNKDFKAIFYVSNFDYLVKGGRV-----FVGNLLKIRVCLHIENGELIPYRKVRGDKKAIEALIEKLREDTPEGSKLRVIGVHADNEAGVVELLNTLRKSYEVVDEIIS--PMGKVITTHVGPGTVGFGIEVL |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VPV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -83700 for 2045 contacts (-40.9/contact) +
2D Compatibility (PS) -27823 + (NN) -8299 + (LL) 1008
1D Compatibility (HY) -19200 + (ID) 3900
Total energy: -141914.0 ( -69.40 by residue)
QMean score : 0.381
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